xgboost feature importance r

## 19 Overall_CondAbove_Average * h(2787-Gr_Liv_Area) 5.80. It is very common to have such a dataset. Notice that our elastic net model is higher than in the last chapter. GBMxgboostsklearnfeature_importanceget_fscore() You can then configure values for max_runtime_secs and/or max_models to set explicit time or number-of-model limits on your run. However, comparing our MARS model to the previous linear models (logistic regression and regularized regression), we do not see any improvement in our overall accuracy rate. In particular, it makes comparing performance across multiple models convenient. Uses Alan Millers Fortran utilities with Thomas Lumleys leaps wrapper. @Bache+Lichman:2013. In the real world, it would be up to you to make this division between train and test data. AUCPR (area under the Precision-Recall curve). Vol. The user can tweak the early stopping paramters to be more or less sensitive. Be it a decision tree or xgboost, caret helps to find the optimal model in the shortest possible time. And looking at the boxplots you can see that the GBM model also had the lowest median absolute residual value. Introduction to Boosted Trees . The information is in the tidy data format with each row forming one observation, with the variable values in the columns.. nfolds: Specify a value >= 2 for the number of folds for k-fold cross-validation of the models in the AutoML run or specify -1 to let AutoML choose if k-fold cross-validation or blending mode should be used. One way to measure progress in the learning of a model is to provide to XGBoost a second dataset already classified. a basic R matrix. \tag{7.1} Input Type: it takes several types of input data: Dense Matrix: Rs dense matrix, i.e. RandomForest feature_importances_ RF feature_importanceVariable importanceGini importancefeature_importance We will load the agaricus datasets embedded with the package and will link them to variables. This parameter allows you to specify which (if any) optional columns should be added to the leaderboard. matrix ; Sparse Matrix: Rs sparse matrix, i.e. The available options are: AUTO: This defaults to logloss for classification and deviance for regression. If youre citing the H2O AutoML algorithm in a paper, please cite our paper from the 7th ICML Workshop on Automated Machine Learning (AutoML). Amar Jaiswal says: February 02, 2016 at 6:28 pm The feature importance part was unknown to me, so thanks a ton Tavish. Taylor & Francis Group: 21523. XGBoost is used only if it is available globally and if it hasnt been explicitly disabled. Residual diagnostics: allows you to compare residual distributions. While all models are importable, only individual models are exportable. Holdout Stacking) instead of the default Stacking method based on cross-validation. This helps you to see if models are picking up unique structure in the data or if they are using common logic. DailyRate, YearsInCurrentRole). Figure 7.1: Blue line represents predicted (y) values as a function of x for alternative approaches to modeling explicit nonlinear regression patterns. This chapter discusses multivariate adaptive regression splines (MARS) (Friedman 1991), an algorithm that automatically creates a piecewise linear model which provides an intuitive stepping block into nonlinearity after grasping the concept of multiple linear regression. If not, we would refer you to R for Data Science (Wickham and Grolemund 2016) to learn the fundamentals of data science with R such as importing, cleaning, transforming, visualizing, and exploring your data. This makes it difficult to compare variable importance across multiple models. I don't see the xgboost R package having any inbuilt feature for doing grid/random search. Data leakage is when information from outside the training dataset is used to create the model. where $C_1(x_i)$ represents $x_i$ values ranging from $c_1 \leq x_i < c_2$, $C_2\left(x_i\right)$ represents $x_i$ values ranging from $c_2 \leq x_i < c_3$, $\dots$, $C_d\left(x_i\right)$ represents $x_i$ values ranging from $c_{d-1} \leq x_i < c_d$. y_i = \beta_0 + \beta_1 C_1(x_i) + \beta_2 C_2(x_i) + \beta_3 C_3(x_i) \dots + \beta_d C_d(x_i) + \epsilon_i, xgboostsklearngridsearch XGBoostClassifier() XGBoostRegression() xgboostsklearn feature_importance get_fscore() PaperXGBoost - A Scalable Tree Boosting System XGBoost 10000 As explained above, both data and label are stored in a list.. seed: Integer. However, due to print restrictions, the hard copy version of this book limits the concepts and methods discussed. Feature Importance is a score assigned to the features of a Machine Learning model that defines how important is a feature to the models prediction.It can help in feature selection and we can get very useful insights about our data. When we apply a single instance of prediction_breakdown to the Ames housing data (80 predictors), it took over 3 hours to execute! Figure 7.5: Variable importance based on impact to GCV (left) and RSS (right) values as predictors are added to the model. The version 0.4-2 is on CRAN, and you can install it by: Formerly available versions can be obtained from the CRAN archive. For the purpose of this example, we use watchlist parameter. H2O AutoML: Scalable Automatic Machine Learning. The information is in the tidy data format with each row forming one observation, with the variable values in the columns.. Alternatively, there are numerous algorithms that are inherently nonlinear. Be it a decision tree or xgboost, caret helps to find the optimal model in the shortest possible time. However, our motivation in almost every case is to describe the techniques in a way that helps develop intuition for its strengths and weaknesses. Basic Training using XGBoost . This document gives a basic walkthrough of the xgboost package for Python. Feature Importance is a score assigned to the features of a Machine Learning model that defines how important is a feature to the models prediction.It can help in feature selection and we can get very useful insights about our data. keep_cross_validation_fold_assignment: Enable this option to preserve the cross-validation fold assignment. When running AutoML with XGBoost (it is included by default), be sure you allow H2O no more than 2/3 of the total available RAM. Note that the algorithm has not seen the test data during the model construction. 1. The version 0.4-2 is on CRAN, and you can install it by: Formerly available versions can be obtained from the CRAN archive. Understanding and comparing how a model uses the predictor variables to make a given prediction can provide trust to you (the analyst) and also the stakeholder(s) that will be using the model output for decision making purposes. The purpose of this Vignette is to show you how to use XGBoost to build a model and make predictions. AutoML performs a hyperparameter search over a variety of H2O algorithms in order to deliver the best model. array([ 2.32421835e-03, 7.21472336e-04, 2.70491223e-03, 3.34521084e-03, 4.19443238e-03, 1.50108737e-03, 3.29160540e-03, A Machine Learning Algorithmic Deep Dive Using R. Hands-on Machine Learning with R; Preface. Use 0 to disable cross-validation; this will also disable Stacked Ensembles (thus decreasing the overall best model performance). A Machine Learning Algorithmic Deep Dive Using R. Although useful, the typical implementation of polynomial regression and step functions require the user to explicitly identify and incorporate which variables should have what specific degree of interaction or at what points of a variable $X$ should cut points be made for the step functions. A benefit of using ensembles of decision tree methods like gradient boosting is that they can automatically provide estimates of feature importance from a trained predictive model. However, decision trees are much better to catch a non linear link between predictors and outcome. This will help us understand if the model is using proper logic that translates well to business decisions. The optimal model retains 12 terms and includes no interaction effects. In this example, all three models appear to be largely influenced by the OverTime, EnvironmentSatisfaction, Age, TotalWorkingYears, and JobLevel variables. Note: AutoML does not run a standard grid search for GLM (returning all the possible models). SageMaker XGBoost allows customers to differentiate the importance of labelled data points by assigning each instance a weight value. Example: If you have 60G RAM, use h2o.init(max_mem_size = "40G"), leaving 20G for XGBoost. You can see that now our model includes interaction terms between a maximum of two hinge functions (e.g., h(2004-Year_Built)*h(Total_Bsmt_SF-1330) represents an interaction effect for those houses built after 2004 and has more than 1,330 square feet of basement space). max_runtime_secs_per_model: Specify the max amount of time dedicated to the training of each individual model in the AutoML run. Following are explanations of the columns: year: 2016 for all data points month: number for month of the year day: number for day of the year week: day of the week as a character string temp_2: max temperature 2 days prior temp_1: max temperature BusinessTravel, WorkLifeBalance), and variables which are only influential in one model but not others (i.e. For example, the EnvironmentSatisfaction variable captures the level of satisfaction regarding the working environment among employees. In this post you will discover automatic feature selection techniques that you can use to prepare your machine learning data in python with scikit-learn. We can use type = "factor" to create a merging path plot and it shows very similar results for each model. Although including many knots may allow us to fit a really good relationship with our training data, it may not generalize very well to new, unseen data. Only ["target_encoding"] is currently supported. However, a single accuracy metric can be a poor indicator of performance. . For the purpose of this example, we use watchlist parameter. (1997) for technical details regarding various alternative encodings for binary and mulinomial classification approaches., This is very similar to CART-like decision trees which youll be exposed to in Chapter 9.. We will show you how you can get it in the most common models of machine learning. In the previous chapters, we focused on linear models (where the analyst has to explicitly specify any nonlinear relationships and interaction effects). Last updated on Oct 27, 2022. Note: GLM uses its own internal grid search rather than the H2O Grid interface. XGBoost is short for eXtreme Gradient Boosting package. H2Os AutoML can also be a helpful tool for the advanced user, by providing a simple wrapper function that performs a large number of modeling-related tasks that would typically require many lines of code, and by freeing up their time to focus on other aspects of the data science pipeline tasks such as data-preprocessing, feature engineering and model deployment. ], #> SuperLearner 2.0-25 2019-08-09 [1], #> survival 3.1-8 2019-12-03 [1], #> sys 3.3 2019-08-21 [1], #> TeachingDemos 2.10 2016-02-12 [1], #> tensorflow 2.0.0 2019-10-02 [1], #> tfestimators 1.9.1 2018-11-07 [1], #> tfruns 1.4 2018-08-25 [1], #> tibble 2.1.3 2019-06-06 [1], #> tidyr 1.0.0 2019-09-11 [1], #> tidyselect 0.2.5 2018-10-11 [1], #> timeDate 3043.102 2018-02-21 [1], #> tinytex 0.15 2019-08-07 [1], #> tseries 0.10-47 2019-06-05 [1], #> TTR 0.23-4 2018-09-20 [1], #> urca 1.3-0 2016-09-06 [1], #> utf8 1.1.4 2018-05-24 [1], #> vcfR 1.8.0 2018-04-17 [1], #> vctrs 0.2.0 2019-07-05 [1], #> vegan 2.5-5 2019-05-12 [1], #> vip 0.2.0 2020-01-20 [1], #> vipor 0.4.5 2017-03-22 [1], #> viridis 0.5.1 2018-03-29 [1], #> viridisLite 0.3.0 2018-02-01 [1], #> visdat 0.5.3 2019-02-15 [1], #> webshot 0.5.1 2018-09-28 [1], #> whisker 0.4 2019-08-28 [1], #> withr 2.1.2 2018-03-15 [1], #> xfun 0.10 2019-10-01 [1], #> xgboost 0.90.0.2 2019-08-01 [1], #> XML 3.98-1.19 2019-03-06 [1], #> xml2 1.2.2 2019-08-09 [1], #> xtable 1.8-4 2019-04-21 [1], #> xts 0.11-2 2018-11-05 [1], #> yaImpute 1.0-31 2019-01-09 [1], #> yaml 2.2.0 2018-07-25 [1], #> yardstick 0.0.3 2019-03-08 [1], #> zeallot 0.1.0 2018-01-28 [1], #> zip 2.0.4 2019-09-01 [1], #> zoo 1.8-6 2019-05-28 [1], #> [1] /Library/Frameworks/R.framework/Versions/3.6/Resources/library, https://github.com/koalaverse/homlr/issues, code chunk: indicates commands or other text that could be typed literally by the user. Lets discover the dimensionality of our datasets. I search for a method in matplotlib.. model.feature_importances gives me following:. Each model has a similar prediction that the new observation has a low probability of predicting: However, how each model comes to that conclusion in a slightly different way. Sparsity: it accepts sparse input for both tree booster and linear booster, and is optimized for sparse input ; Customization: it supports customized objective functions and evaluation functions. Most of the time, all youll need to do is specify the data arguments. In other cases, the grids will stop early, and if theres time left, the top two random grids will be restarted to train more models. The Python package is consisted of 3 different interfaces, including native interface, scikit-learn interface and dask interface. The individual PDPs illustrate that our model found that one knot in each feature provides the best fit. Consequently, we can have a decent amount of trust that these are strong signals for this observation regardless of model. The feature importance type for the feature_importances_ property: For tree model, its either gain, weight, cover, total_gain or total_cover. Until now, all the learnings we have performed were based on boosting trees. Data leakage is a big problem in machine learning when developing predictive models. The main difference is that above it was after building the model, and now it is during the construction that we measure errors. XGBoost, which is included in H2O as a third party library, requires its own memory outside the H2O (Java) cluster. AutoML includes XGBoost GBMs (Gradient Boosting Machines) among its set of algorithms. Note that early-stopping is enabled by default if the number of samples is larger than 10,000. Get the best model, or the best model of a certain type: Once you have retreived the model in R or Python, you can inspect the model parameters as follows: When using Python or R clients, you can also access meta information with the following AutoML object properties: event_log: an H2OFrame with selected AutoML backend events generated during training. The models are ranked by a default metric based on the problem type (the second column of the leaderboard). In recent years, the demand for machine learning experts has outpaced the supply, despite the surge of people entering the field. The only thing that XGBoost does is a regression. To examine the trained models more closely, you can interact with the models, either by model ID, or a convenience function which can grab the best model of each model type (ranked by the default metric, or a metric of your choosing). Therefore, in a dataset mainly made of 0, memory size is reduced.It is very common to have such a dataset. How do we interpret this plot? Who should read this 16.3 Permutation-based feature importance. eval.metric allows us to monitor two new metrics for each round, logloss and error. In these very rare cases, you will want to save your model and load it when required. To help users assess the complexity of AutoML models, the h2o.get_leaderboard function has been been expanded by allowing an extra_columns parameter. Left edge of x-axis is the loss function for the. 2) Can I use the feature importance returned by XGBoost classifer to perform Recursive Feature elimination and evaluation of kNN classifer manually with a for loop. For the most part, we minimize mathematical complexity when possible but also provide resources to get deeper into the details if desired. Therefore, if either of these frames are not provided by the user, they will be automatically partitioned from the training data. Basic Training using XGBoost . The length of the remaining variables represent the variable importance. Figure 7.2: Examples of fitted regression splines of one (A), two (B), three (C), and four (D) knots. An example use is include_algos = ["GLM", "DeepLearning", "DRF"] in Python or include_algos = c("GLM", "DeepLearning", "DRF") in R. Defaults to None/NULL, which means that all appropriate H2O algorithms will be used if the search stopping criteria allows and if no algorithms are specified in exclude_algos. Each variable is a list containing two things, label and data: label is the outcome of our dataset meaning it is the binary classification we will try to predict. This value defaults to -1. Deep Learning. Basic Training using XGBoost . By default, the exploitation phase is disabled (exploitation_ratio=0) as this is still experimental; to activate it, it is recommended to try a ratio around 0.1. You can even add other meta data in it. Advanced R. Chapman; Hall/CRC. Again 0? test: will be used to assess the quality of our model. The first steps toward simplifying machine learning involved developing simple, unified interfaces to a variety of machine learning algorithms (e.g. ## 20 Condition_1Norm * h(2004-Year_Built) 148. The gradient boosted trees has been around for a while, and there are a lot of materials on the topic. Looking at the quantiles you can see that the median residuals are lowest for the GBM model. Most of the features below have been implemented to help you to improve your model by offering a better understanding of its content. A Machine Learning Algorithmic Deep Dive Using R. Hands-on Machine Learning with R; Preface. Figure 7.3 illustrates the model selection plot that graphs the GCV $R^2$ (left-hand $y$-axis and solid black line) based on the number of terms retained in the model ($x$-axis) which are constructed from a certain number of original predictors (right-hand $y$-axis). ## 14 Overall_QualVery_Good * h(Bsmt_Full_Bath-1) 48011. max_runtime_secs: This argument specifies the maximum time that the AutoML process will run for. Following are explanations of the columns: year: 2016 for all data points month: number for month of the year day: number for day of the year week: day of the week as a character string temp_2: max temperature 2 days prior temp_1: max temperature matrix ; Sparse Matrix: Rs sparse matrix, i.e. OReilly Media, Inc. #> Session info , #> version R version 3.6.2 (2019-12-12), #> Packages , #> ! To demonstrate DALEXs capabilities well use the employee attrition data that has been included in the rsample package. There are many types and sources of feature importance scores, although popular examples include statistical correlation scores, coefficients calculated as part of linear models, decision trees, and permutation importance (Trevor Hastie and Thomas Lumleys leaps wrapper. The purpose is to help you to set the best parameters, which is the key of your model quality. First, the shifted x-axis left edge helps to illustrate the difference in the RMSE loss between the three models (i.e. It has been used to win several Kaggle competitions. leaderboard_frame: This argument allows the user to specify a particular data frame to use to score and rank models on the leaderboard. The feature importance type for the feature_importances_ property: For tree model, its either gain, weight, cover, total_gain or total_cover. R has emerged over the last couple decades as a first-class tool for scientific computing tasks, and has been a consistent leader in implementing statistical methodologies for analyzing data. The gradient boosted trees has been around for a while, and there are a lot of materials on the topic. In this specific case, linear boosting gets slightly better performance metrics than a decision tree based algorithm. exploitation_ratio: Specify the budget ratio (between 0 and 1) dedicated to the exploitation (vs exploration) phase. Using the previous example, you can retrieve the leaderboard as follows: Here is an example of a leaderboard (with all columns) for a binary classification task. The H2O AutoML algorithm was first released in H2O 3.12.0.1 on June 6, 2017. In that case, the value is computed as 1/sqrt(nrows * non-NA-rate). Note that the algorithm has not seen the test data during the model construction. There is more information about how Target Encoding is automatically applied here. We recommend using the H2O Model Explainability interface to explore and further evaluate your AutoML models, which can inform your choice of model (if you have other goals beyond simply maximizing model accuracy). The DALEX architecture can be split into three primary operations: Although DALEX does have native support for some ML model objects (i.e. Introduction to Boosted Trees . This book was built with the following packages and R version. TIP: variable_importance includes an n_sample argument that, by default, will sample only 1000 observations to try increase the speed of computation. The only difference with the previous command is booster = "gblinear" parameter (and removing eta parameter). Therefore, in a dataset mainly made of 0, memory size is reduced. However, some recent R packages that focus purely on ML interpretability agnostic to any specific ML algorithm are gaining popularity. ## $ data :Formal class 'dgCMatrix' [package "Matrix"] with 6 slots. For an example using H2OAutoML with the h2o.sklearn module, click here. Figure 16.3 presents single-permutation results for the random forest, logistic regression (see Section 4.2.1), and gradient boosting (see Section 4.2.3) models.The best result, in terms of the smallest value of $L^0$, is obtained for the generalized More models can be trained and added to an existing AutoML project by specifying the same project name in multiple calls to the AutoML function (as long as the same training frame is used in subsequent runs). This page lists all open or in-progress AutoML JIRA tickets. We see our best models include no interaction effects and the optimal model retained 12 terms. Nor is this book designed to be a deep dive into the theory and math underpinning machine learning algorithms. Once weve identified influential variables across all three models, next we likely want to understand how the relationship between these influential variables and the predicted response differ between the models. As explained above, both data and label are stored in a list.. It is very common to have such a dataset. Therefore it can learn on the first dataset and test its model on the second one. We will show you how you can get it in the most common models of machine learning. This tutorial will explain boosted trees in a self In the second part we will want to test it and assess its quality. We invite you to learn more at page linked above. 2016. The system runs more than An important task in ML interpretation is to understand which predictor variables are relatively influential on the predicted outcome. The data features that you use to train your machine learning models have a huge influence on the performance you can achieve. However, you can also see a higher number of residuals in the tail of the GBM residual distribution (left plot) suggesting that there may be a higher number of large residuals compared to the GLM model. The left side of the plot is the merging path plot, which shows the similarity between groups via hierarchical clustering. Alternatively, variables such as JobSatisfaction, OverTime, and EnvironmentSatisfaction reduced this observations probability of attriting. It also shows us that 36 of 39 terms were used from 27 of the 307 original predictors. as.numeric(pred > 0.5) applies our rule that when the probability (<=> regression <=> prediction) is > 0.5 the observation is classified as 1 and 0 otherwise ; probabilityVectorPreviouslyComputed != test$label computes the vector of error between true data and computed probabilities ; mean(vectorOfErrors) computes the average error itself. May be you are not a big fan of losing time in redoing the same task again and again? There are currently two types of Stacked Ensembles: one which includes all the base models (All Models), and one comprised only of the best model from each algorithm family (Best of Family). If youre using 3.34.0.1 or later, AutoML should use all the time that its given using max_runtime_secs. Caret Package is a comprehensive framework for building machine learning models in R. In this tutorial, I explain nearly all the core features of the caret package and walk you through the step-by-step process of building predictive models. Feature importance is similar to R gbm packages relative influence (rel.inf). Experimental. You can also inspect some of the earlier All Models Stacked Ensembles that have fewer models as an alternative to the Best of Family ensembles. max_after_balance_size: Specify the maximum relative size of the training data after balancing class counts (balance_classes must be enabled). But in python such method seems to be missing. Basic training . The package is made to be extendible, so that users are also allowed to define their own objective functions easily. XGBoost has several features to help you view the learning progress internally. Sparsity: it accepts sparse input for both tree booster and linear booster, and is optimized for sparse input ; Customization: it supports customized objective functions and evaluation functions. \text{y} = Basic training . Defaults to 0 (disabled). It is available in many languages, like: C++, Java, Python, R, Julia, Scala. ML model and package agnostic: can be used for any supervised regression and binary classification ML model where you can customize the format of the predicted output. Variable importance: uses a permutation-based approach for variable importance, which is model agnostic, and accepts any loss function to assess importance. Feature importance is similar to R gbm packages relative influence (rel.inf). However, as is, there are some problems with this package scaling to wider data sets commonly used by organizations. The metalearner also uses a logit transform (on the base learner CV preds) for classification tasks before training. In this post you will discover automatic feature selection techniques that you can use to prepare your machine learning data in python with scikit-learn. The Elements of Statistical Learning. DALEX procedures. In some very specific cases, like when you want to pilot XGBoost from caret package, you will want to save the model as a R binary vector. In this post you will discover automatic feature selection techniques that you can use to prepare your machine learning data in python with scikit-learn. ], #> factoextra 1.0.5 2017-08-22 [1], #> FactoMineR 1.41 2018-05-04 [1], #> fansi 0.4.1 2020-01-08 [1], #> fit.models 0.5-14 2017-04-06 [1], #> flashClust 1.01-2 2012-08-21 [1], #> forcats 0.4.0 2019-02-17 [1], #> foreach 1.4.4 2017-12-12 [1], #> forecast 8.7 2019-04-29 [1], #> foreign 0.8-72 2019-08-02 [1], #> forge 0.2.0 2019-02-26 [1], #> Formula 1.2-3 2018-05-03 [1], #> fracdiff 1.4-2 2012-12-02 [1], #> furrr 0.1.0 2018-05-16 [1], #> future 1.13.0 2019-05-08 [1], #> gbm 2.1.5 2019-01-14 [1], #> gdata 2.18.0 2017-06-06 [1], #> generics 0.0.2 2018-11-29 [1], #> ggbeeswarm 0.6.0 2017-08-07 [1], #> ggmap 3.0.0 2019-02-05 [1], #> ggplot2 3.2.1 2019-08-10 [1], #> ggplotify 0.0.3 2018-08-03 [1], #> ggpubr 0.2 2018-11-15 [1], #> ggrepel 0.8.1 2019-05-07 [1], #> ggsci 2.9 2018-05-14 [1], #> ggsignif 0.5.0 2019-02-20 [1], #> glmnet 3.0 2019-11-09 [1], #> globals 0.12.4 2018-10-11 [1], #> glue 1.3.1 2019-03-12 [1], #> gower 0.2.0 2019-03-07 [1], #> gplots 3.0.1.1 2019-01-27 [1], #> gridExtra 2.3 2017-09-09 [1], #> gridGraphics 0.4-1 2019-05-20 [1], #> gridSVG 1.7-0 2019-02-12 [1], #> gtable 0.3.0 2019-03-25 [1], #> gtools 3.8.1 2018-06-26 [1], #> h2o 3.22.1.1 2019-01-10 [1], #> haven 2.2.0 2019-11-08 [1], #> HDclassif 2.1.0 2018-05-11 [1], #> hexbin 1.27.3 2019-05-14 [1], #> highr 0.8 2019-03-20 [1], #> hms 0.5.2 2019-10-30 [1], #> htmltools 0.3.6 2017-04-28 [1], #> htmlwidgets 1.3 2018-09-30 [1], #> httpuv 1.5.1 2019-04-05 [1], #> httr 1.4.1 2019-08-05 [1], #> iml 0.9.0 2019-02-05 [1], #> inum 1.0-1 2019-04-25 [1], #> ipred 0.9-9 2019-04-28 [1], #> iterators 1.0.10 2018-07-13 [1], #> jpeg 0.1-8.1 2019-10-24 [1], #> jsonlite 1.6 2018-12-07 [1], #> kableExtra 1.1.0 2019-03-16 [1], #> keras 2.2.5.0 2019-10-08 [1], #> kernlab 0.9-27 2018-08-10 [1], #> KernSmooth 2.23-16 2019-10-15 [1], #> knitr 1.25 2019-09-18 [1], #> labeling 0.3 2014-08-23 [1], #> later 0.8.0 2019-02-11 [1], #> lattice 0.20-38 2018-11-04 [1], #> lava 1.6.5 2019-02-12 [1], #> lazyeval 0.2.2 2019-03-15 [1], #> leaps 3.0 2017-01-10 [1], #> libcoin 1.0-4 2019-02-28 [1], #> lifecycle 0.1.0 2019-08-01 [1], #> lime 0.5.1 2019-11-12 [1], #> listenv 0.7.0 2018-01-21 [1], #> lme4 1.1-21 2019-03-05 [1], #> lmtest 0.9-37 2019-04-30 [1], #> lubridate 1.7.4 2018-04-11 [1], #> magrittr 1.5 2014-11-22 [1], #> maptools 0.9-5 2019-02-18 [1], #> markdown 1.1 2019-08-07 [1], #> MASS 7.3-51.4 2019-03-31 [1], #> Matrix 1.2-18 2019-11-27 [1], #> MatrixModels 0.4-1 2015-08-22 [1], #> mclust 5.4.3 2019-03-14 [1], #> memuse 4.0-0 2017-11-10 [1], #> Metrics 0.1.4 2018-07-09 [1], #> mgcv 1.8-31 2019-11-09 [1], #> mime 0.8 2019-12-19 [1], #> minqa 1.2.4 2014-10-09 [1], #> mlbench 2.1-1 2012-07-10 [1], #> mmapcharr 0.3.0 2019-02-26 [1], #> ModelMetrics 1.2.2 2018-11-03 [1], #> munsell 0.5.0 2018-06-12 [1], #> mvtnorm 1.0-10 2019-03-05 [1], #> NbClust 3.0 2015-04-13 [1], #> nlme 3.1-142 2019-11-07 [1], #> nloptr 1.2.1 2018-10-03 [1], #> nnet 7.3-12 2016-02-02 [1], #> nnls 1.4 2012-03-19 [1], #> numDeriv 2016.8-1 2016-08-27 [1], #> openssl 1.4.1 2019-07-18 [1], #> openxlsx 4.1.0.1 2019-05-28 [1], #> partykit 1.2-3 2019-01-31 [1], #> pbapply 1.4-2 2019-08-31 [1], #> pbkrtest 0.4-7 2017-03-15 [1], #> pBrackets 1.0 2014-10-17 [1], #> pcadapt 4.1.0 2019-02-27 [1], #> pcaPP 1.9-73 2018-01-14 [1], #> pdp 0.7.0 2018-08-27 [1], #> permute 0.9-5 2019-03-12 [1], #> pillar 1.4.2 2019-06-29 [1], #> pinfsc50 1.1.0 2016-12-02 [1], #> pkgconfig 2.0.3 2019-09-22 [1], #> plogr 0.2.0 2018-03-25 [1], #> plotly 4.9.1 2019-11-07 [1], #> plotmo 3.5.4 2019-04-06 [1], #> plotrix 3.7-5 2019-04-07 [1], #> plotROC 2.2.1 2018-06-23 [1], #> pls 2.7-1 2019-03-23 [1], #> plyr 1.8.4 2016-06-08 [1], #> png 0.1-7 2013-12-03 [1], #> polynom 1.4-0 2019-03-22 [1], #> prediction 0.3.6.2 2019-01-31 [1], #> prettyunits 1.0.2 2015-07-13 [1], #> pROC 1.14.0 2019-03-12 [1], #> processx 3.4.1 2019-07-18 [1], #> prodlim 2018.04.18 2018-04-18 [1], #> progress 1.2.2 2019-05-16 [1], #> promises 1.0.1 2018-04-13 [1], #> ps 1.3.0 2018-12-21 [1], #> purrr 0.3.3 2019-10-18 [1], #> quadprog 1.5-7 2019-05-06 [1], #> quantmod 0.4-15 2019-06-17 [1], #> quantreg 5.38 2018-12-18 [1], #> R6 2.4.1 2019-11-12 [1], #> ranger 0.11.2 2019-03-07 [1], #> rARPACK 0.11-0 2016-03-10 [1], #> RColorBrewer 1.1-2 2014-12-07 [1], #> Rcpp 1.0.3 2019-11-08 [1], #> RcppArmadillo 0.9.500.2.0 2019-06-12 [1], #> RcppEigen 0.3.3.5.0 2018-11-24 [1], #> RCurl 1.95-4.12 2019-03-04 [1], #> readr 1.3.1 2018-12-21 [1], #> readxl 1.3.1 2019-03-13 [1], #> recipes 0.1.7 2019-09-15 [1], #> rematch 1.0.1 2016-04-21 [1], #> reshape2 1.4.3 2017-12-11 [1], #> reticulate 1.13 2019-07-24 [1], #> RgoogleMaps 1.4.3 2018-11-07 [1], #> rio 0.5.16 2018-11-26 [1], #> rjson 0.2.20 2018-06-08 [1], #> rlang 0.4.4 2020-01-28 [1], #> rmarkdown 1.15.1 2019-09-09 [1], #> rmio 0.1.2 2019-02-22 [1], #> robust 0.4-18 2017-04-27 [1], #> robustbase 0.93-5 2019-05-12 [1], #> ROCR 1.0-7 2015-03-26 [1], #> rpart 4.1-15 2019-04-12 [1], #> rpart.plot 3.0.7 2019-04-12 [1], #> rrcov 1.4-7 2018-11-15 [1], #> rsample 0.0.5 2019-07-12 [1], #> RSpectra 0.14-0 2019-04-04 [1], #> rstudioapi 0.10 2019-03-19 [1], #> rsvd 1.0.0 2018-11-06 [1], #> rvcheck 0.1.3 2018-12-06 [1], #> rvest 0.3.5 2019-11-08 [1], #> scales 1.0.0 2018-08-09 [1], #> scatterplot3d 0.3-41 2018-03-14 [1], #> selectr 0.4-1 2018-04-06 [1], #> shape 1.4.4 2018-02-07 [1], #> shiny 1.3.2 2019-04-22 [1], #> shinythemes 1.1.2 2018-11-06 [1], #> sourcetools 0.1.7 2018-04-25 [1], #> sp 1.3-1 2018-06-05 [1], #> SparseM 1.77 2017-04-23 [1], #> sparsepca 0.1.2 2018-04-11 [1], #> SQUAREM 2017.10-1 2017-10-07 [1], #> stringi 1.4.3 2019-03-12 [1], #> stringr 1.4.0.9000 2019-11-12 [1], #> R subsemble [?

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